HL_1VY4_209
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUCCACAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY4_209 not in the Motif Atlas
- Homologous match to HL_7RQB_060
- Geometric discrepancy: 0.129
- The information below is about HL_7RQB_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06192.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 14
Unit IDs
1VY4|1|DA|C|2471
1VY4|1|DA|G|2472
1VY4|1|DA|U|2473
1VY4|1|DA|C|2474
1VY4|1|DA|C|2475
1VY4|1|DA|A|2476
1VY4|1|DA|C|2477
1VY4|1|DA|A|2478
1VY4|1|DA|G|2479
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CW
- Transfer RNA; tRNA
- Chain D9
- 50S ribosomal protein L36
- Chain DH
- 50S ribosomal protein L6
- Chain DQ
- 50S ribosomal protein L16
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