HL_1VY4_217

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

1VY4|1|DA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_217 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0661

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1VY4|1|DA|G|2819
1VY4|1|DA|A|2820
1VY4|1|DA|A|2821
1VY4|1|DA|G|2822
1VY4|1|DA|A|2823
1VY4|1|DA|C|2824
1VY4|1|DA|C|2825
1VY4|1|DA|A|2826
1VY4|1|DA|C|2827

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19