HL_1VY4_220

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_220 not in the Motif Atlas

Homologous match to HL_7RQB_071

Geometric discrepancy: 0.113

The information below is about HL_7RQB_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1VY4|1|DB|G|86
1VY4|1|DB|G|87
1VY4|1|DB|C|88
1VY4|1|DB|G|89
1VY4|1|DB|A|90
1VY4|1|DB|C|91

Current chains

Chain DB

5S Ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25