HL_1VY4_223

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_223 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.3449

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1VY4|1|BA|C|884
1VY4|1|BA|C|885
1VY4|1|BA|C|886
1VY4|1|BA|A|887
1VY4|1|BA|C|888
1VY4|1|BA|C|889
1VY4|1|BA|A|890
1VY4|1|BA|G|892

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13