HL_1VY5_001
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 1VY5|1|AA|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY5_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0532
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
1VY5|1|AA|U|12
1VY5|1|AA|U|13
1VY5|1|AA|U|14
1VY5|1|AA|G|15
1VY5|1|AA|A|16
1VY5|1|AA|U|17
1VY5|1|AA|C|18
1VY5|1|AA|C|19
1VY5|1|AA|U|20
1VY5|1|AA|G|21
1VY5|1|AA|G|22
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AE
- 30S ribosomal protein S5
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
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