HL_1VY5_008

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0821

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1VY5|1|AA|C|320
1VY5|1|AA|A|321
1VY5|1|AA|C|322
1VY5|1|AA|U|323
1VY5|1|AA|G|324
1VY5|1|AA|A|325
1VY5|1|AA|G|326
1VY5|1|AA|A|327
1VY5|1|AA|C|328
1VY5|1|AA|A|329
1VY5|1|AA|C|330
1VY5|1|AA|G|331
1VY5|1|AA|G|332
1VY5|1|AA|G|333

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20