HL_1VY5_018

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

1VY5|1|AA|U|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_018 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.1928

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

1VY5|1|AA|G|838
1VY5|1|AA|U|839
1VY5|1|AA|C|840
1VY5|1|AA|U|841
1VY5|1|AA|C|848

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2