HL_1VY5_040
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 1VY5|1|AY|U|33
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY5_040 not in the Motif Atlas
- Homologous match to HL_5EL4_222
- Geometric discrepancy: 0.4979
- The information below is about HL_5EL4_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VY5|1|AY|G|30
1VY5|1|AY|A|31
1VY5|1|AY|PSU|32
1VY5|1|AY|U|33
1VY5|1|AY|G|34
1VY5|1|AY|A|35
1VY5|1|AY|A|36
1VY5|1|AY|MIA|37
1VY5|1|AY|A|38
1VY5|1|AY|PSU|39
1VY5|1|AY|C|40
Current chains
- Chain AY
- E-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain AV
- mRNA
- Chain AX
- Transfer RNA; tRNA
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