HL_1VY5_041
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY5_041 not in the Motif Atlas
- Homologous match to HL_1U0B_003
- Geometric discrepancy: 0.2981
- The information below is about HL_1U0B_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
1VY5|1|AY|G|53
1VY5|1|AY|5MU|54
1VY5|1|AY|PSU|55
1VY5|1|AY|C|56
1VY5|1|AY|G|57
1VY5|1|AY|A|58
1VY5|1|AY|U|59
1VY5|1|AY|U|60
1VY5|1|AY|C|61
Current chains
- Chain AY
- E-site tRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: