3D structure

PDB id
1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGGAUGACC
Length
9 nucleotides
Bulged bases
1VY5|1|BA|U|1175, 1VY5|1|BA|G|1176
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VY5_070 not in the Motif Atlas
Homologous match to HL_7A0S_030
Geometric discrepancy: 0.551
The information below is about HL_7A0S_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1VY5|1|BA|G|1170
1VY5|1|BA|G|1171
1VY5|1|BA|G|1173
1VY5|1|BA|A|1174
1VY5|1|BA|U|1175
1VY5|1|BA|G|1176
1VY5|1|BA|A|1177
1VY5|1|BA|C|1178
1VY5|1|BA|C|1179

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BV
50S ribosomal protein L21

Coloring options:


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