HL_1VY5_070
3D structure
- PDB id
- 1VY5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GGGAUGACC
- Length
- 9 nucleotides
- Bulged bases
- 1VY5|1|BA|U|1175, 1VY5|1|BA|G|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY5_070 not in the Motif Atlas
- Homologous match to HL_7A0S_030
- Geometric discrepancy: 0.551
- The information below is about HL_7A0S_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VY5|1|BA|G|1170
1VY5|1|BA|G|1171
1VY5|1|BA|G|1173
1VY5|1|BA|A|1174
1VY5|1|BA|U|1175
1VY5|1|BA|G|1176
1VY5|1|BA|A|1177
1VY5|1|BA|C|1178
1VY5|1|BA|C|1179
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BV
- 50S ribosomal protein L21
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