HL_1VY5_076

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

1VY5|1|BA|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_076 not in the Motif Atlas

Homologous match to HL_7RQB_037

Geometric discrepancy: 0.0705

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1VY5|1|BA|C|1451
1VY5|1|BA|A|1452
1VY5|1|BA|U|1453
1VY5|1|BA|G|1455
1VY5|1|BA|G|1456
1VY5|1|BA|A|1457
1VY5|1|BA|C|1458
1VY5|1|BA|G|1459

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17