HL_1VY5_142

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_142 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.0658

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1VY5|1|CA|C|1515
1VY5|1|CA|G|1516
1VY5|1|CA|G|1517
1VY5|1|CA|A|1518
1VY5|1|CA|A|1519
1VY5|1|CA|G|1520

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA