HL_1VY5_162

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

1VY5|1|DA|G|321, 1VY5|1|DA|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_162 not in the Motif Atlas

Homologous match to HL_7RQB_011

Geometric discrepancy: 0.0865

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

1VY5|1|DA|C|319
1VY5|1|DA|A|320
1VY5|1|DA|G|321
1VY5|1|DA|A|322
1VY5|1|DA|G|323

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24