HL_1VY5_208

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_208 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0723

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

1VY5|1|DA|C|2404
1VY5|1|DA|G|2405
1VY5|1|DA|U|2406
1VY5|1|DA|G|2407
1VY5|1|DA|U|2408
1VY5|1|DA|G|2409
1VY5|1|DA|G|2410
1VY5|1|DA|A|2411
1VY5|1|DA|A|2412
1VY5|1|DA|G|2413

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15