HL_1VY5_229

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY5|1|DA|G|883
1VY5|1|DA|C|884
1VY5|1|DA|C|885
1VY5|1|DA|C|886
1VY5|1|DA|A|887
1VY5|1|DA|C|888
1VY5|1|DA|C|889
1VY5|1|DA|A|890
1VY5|1|DA|G|892
1VY5|1|DA|C|893

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CW

Transfer RNA; tRNA