HL_1VY5_232

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_232 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1616

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1VY5|1|DA|G|2304
1VY5|1|DA|A|2305
1VY5|1|DA|C|2306
1VY5|1|DA|G|2307
1VY5|1|DA|G|2308
1VY5|1|DA|A|2309
1VY5|1|DA|A|2310
1VY5|1|DA|A|2311
1VY5|1|DA|U|2312

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DG

50S ribosomal protein L5