HL_1VY6_026

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

1VY6|1|AA|U|1136, 1VY6|1|AA|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_026 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2584

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|AA|G|1134
1VY6|1|AA|U|1135
1VY6|1|AA|U|1136
1VY6|1|AA|C|1137
1VY6|1|AA|G|1138
1VY6|1|AA|G|1139
1VY6|1|AA|C|1140

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9