HL_1VY6_030
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 1VY6|1|AA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY6_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0975
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1VY6|1|AA|G|1356
1VY6|1|AA|A|1357
1VY6|1|AA|U|1358
1VY6|1|AA|C|1359
1VY6|1|AA|A|1360
1VY6|1|AA|G|1361
1VY6|1|AA|C|1362
1VY6|1|AA|C|1363
1VY6|1|AA|A|1363|||A
1VY6|1|AA|U|1364
1VY6|1|AA|G|1365
1VY6|1|AA|C|1366
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AM
- 30S ribosomal protein S13
- Chain AN
- 30S ribosomal protein S14 type Z
- Chain AU
- 30S ribosomal protein Thx
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