HL_1VY6_032

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_032 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1107

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

1VY6|1|AA|C|1515
1VY6|1|AA|G|1516
1VY6|1|AA|G|1517
1VY6|1|AA|A|1518
1VY6|1|AA|A|1519
1VY6|1|AA|G|1520

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA