HL_1VY6_047

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

1VY6|1|BA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_047 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0604

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1VY6|1|BA|G|382
1VY6|1|BA|U|383
1VY6|1|BA|U|384
1VY6|1|BA|C|385
1VY6|1|BA|G|386
1VY6|1|BA|U|387
1VY6|1|BA|G|388
1VY6|1|BA|G|389
1VY6|1|BA|A|390
1VY6|1|BA|G|391
1VY6|1|BA|C|392

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BP

50S ribosomal protein L15