HL_1VY6_061

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

1VY6|1|BA|A|887, 1VY6|1|BA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_061 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.3404

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

1VY6|1|BA|C|884
1VY6|1|BA|C|885
1VY6|1|BA|C|886
1VY6|1|BA|A|887
1VY6|1|BA|C|888
1VY6|1|BA|C|889
1VY6|1|BA|A|890
1VY6|1|BA|G|892

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13