HL_1VY6_064

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGACAGCGGUCGAG

Length

17 nucleotides

Bulged bases

1VY6|1|BA|A|1046, 1VY6|1|BA|G|1106

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|BA|C|1043
1VY6|1|BA|G|1044
1VY6|1|BA|A|1045
1VY6|1|BA|A|1046
1VY6|1|BA|G|1047
1VY6|1|BA|A|1048
1VY6|1|BA|C|1049
1VY6|1|BA|A|1050
1VY6|1|BA|G|1051
1VY6|1|BA|C|1052
1VY6|1|BA|G|1106
1VY6|1|BA|G|1107
1VY6|1|BA|U|1108
1VY6|1|BA|C|1109
1VY6|1|BA|G|1110
1VY6|1|BA|A|1111
1VY6|1|BA|G|1112

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6