HL_1VY6_073
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG
- Length
- 4 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY6_073 not in the Motif Atlas
- Homologous match to HL_7A0S_039
- Geometric discrepancy: 0.1139
- The information below is about HL_7A0S_039
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 37
Unit IDs
1VY6|1|BA|C|1565
1VY6|1|BA|A|1566
1VY6|1|BA|A|1567
1VY6|1|BA|G|1568
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L2
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