HL_1VY6_106

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_106 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.0761

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1VY6|1|CA|U|12
1VY6|1|CA|U|13
1VY6|1|CA|U|14
1VY6|1|CA|G|15
1VY6|1|CA|A|16
1VY6|1|CA|U|17
1VY6|1|CA|C|18
1VY6|1|CA|C|19
1VY6|1|CA|U|20
1VY6|1|CA|G|21
1VY6|1|CA|G|22

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CE

30S ribosomal protein S5

Chain CV

mRNA