HL_1VY6_167

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|DA|G|883
1VY6|1|DA|C|884
1VY6|1|DA|C|885
1VY6|1|DA|C|886
1VY6|1|DA|A|887
1VY6|1|DA|C|888
1VY6|1|DA|C|889
1VY6|1|DA|A|890
1VY6|1|DA|G|892
1VY6|1|DA|C|893

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CM

30S ribosomal protein S13