HL_1VY6_170

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_170 not in the Motif Atlas

Homologous match to HL_7A0S_030

Geometric discrepancy: 0.5868

The information below is about HL_7A0S_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|DA|G|1169
1VY6|1|DA|G|1170
1VY6|1|DA|G|1171
1VY6|1|DA|C|1178
1VY6|1|DA|C|1179
1VY6|1|DA|C|1180

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DV

50S ribosomal protein L21