HL_1VY6_196
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY6_196 not in the Motif Atlas
- Homologous match to HL_7RQB_056
- Geometric discrepancy: 0.096
- The information below is about HL_7RQB_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_12078.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
1VY6|1|DA|C|2324
1VY6|1|DA|G|2325
1VY6|1|DA|C|2326
1VY6|1|DA|A|2327
1VY6|1|DA|A|2328
1VY6|1|DA|G|2329
1VY6|1|DA|G|2330
1VY6|1|DA|G|2331
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CX
- Transfer RNA; tRNA
- Chain D0
- 50S ribosomal protein L27
- Chain DG
- 50S ribosomal protein L5
- Chain DQ
- 50S ribosomal protein L16
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