HL_1VY6_199

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

1VY6|1|DA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_199 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0911

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

1VY6|1|DA|C|2404
1VY6|1|DA|G|2405
1VY6|1|DA|U|2406
1VY6|1|DA|G|2407
1VY6|1|DA|U|2408
1VY6|1|DA|G|2409
1VY6|1|DA|G|2410
1VY6|1|DA|A|2411
1VY6|1|DA|A|2412
1VY6|1|DA|G|2413

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15