HL_1W2B_002
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCACGGAG
- Length
- 9 nucleotides
- Bulged bases
- 1W2B|1|0|C|87
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1W2B_002 not in the Motif Atlas
- Homologous match to HL_4V9F_002
- Geometric discrepancy: 0.1023
- The information below is about HL_4V9F_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
1W2B|1|0|C|83
1W2B|1|0|G|84
1W2B|1|0|C|85
1W2B|1|0|A|86
1W2B|1|0|C|87
1W2B|1|0|G|88
1W2B|1|0|G|89
1W2B|1|0|A|90
1W2B|1|0|G|91
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L39E
- Chain 5
- TRIGGER FACTOR
- Chain S
- RIBOSOMAL PROTEIN L24
- Chain U
- 50S RIBOSOMAL PROTEIN L24E
Coloring options: