HL_1W2B_036

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAACUC

Length

7 nucleotides

Bulged bases

1W2B|1|0|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_036 not in the Motif Atlas

Homologous match to HL_4V9F_036

Geometric discrepancy: 0.0949

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

1W2B|1|0|G|1468
1W2B|1|0|C|1469
1W2B|1|0|A|1470
1W2B|1|0|A|1471
1W2B|1|0|C|1472
1W2B|1|0|U|1473
1W2B|1|0|C|1474

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15E

Chain Z

RIBOSOMAL PROTEIN L37E