HL_1W2B_040

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_040 not in the Motif Atlas

Homologous match to HL_4V9F_040

Geometric discrepancy: 0.0919

The information below is about HL_4V9F_040

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1W2B|1|0|G|1628
1W2B|1|0|G|1629
1W2B|1|0|A|1630
1W2B|1|0|A|1631
1W2B|1|0|A|1632
1W2B|1|0|C|1633

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L19E