HL_1W2B_055

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1W2B|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0679

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1W2B|1|0|C|2281
1W2B|1|0|U|2282
1W2B|1|0|G|2283
1W2B|1|0|G|2284
1W2B|1|0|G|2285
1W2B|1|0|G|2286
1W2B|1|0|C|2287
1W2B|1|0|G|2288
1W2B|1|0|G|2289

Current chains

Chain 0

23S RRNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E