HL_1W2B_063

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCAGAAG

Length

8 nucleotides

Bulged bases

1W2B|1|0|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_063 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.055

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1W2B|1|0|U|2563
1W2B|1|0|G|2564
1W2B|1|0|C|2565
1W2B|1|0|A|2566
1W2B|1|0|G|2567
1W2B|1|0|A|2568
1W2B|1|0|A|2569
1W2B|1|0|G|2570

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6P