HL_1W2B_065

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1W2B_065 not in the Motif Atlas

Homologous match to HL_4V9F_065

Geometric discrepancy: 0.0707

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1W2B|1|0|C|2629
1W2B|1|0|G|2630
1W2B|1|0|U|2631
1W2B|1|0|G|2632
1W2B|1|0|A|2633
1W2B|1|0|G|2634

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P