3D structure

PDB id
1XJR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGAGUAC
Length
7 nucleotides
Bulged bases
1XJR|1|A|U|25
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA with one bulged base
Broad Annotation
GNRA
Motif group
HL_85603.1
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
304

Unit IDs

1XJR|1|A|G|21
1XJR|1|A|G|22
1XJR|1|A|A|23
1XJR|1|A|G|24
1XJR|1|A|U|25
1XJR|1|A|A|26
1XJR|1|A|C|27

Current chains

Chain A
s2m RNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0943 s