HL_1XJR_001

3D structure

PDB id

1XJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGUAC

Length

7 nucleotides

Bulged bases

1XJR|1|A|U|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA with one bulged base

Broad Annotation

GNRA

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

1XJR|1|A|G|21
1XJR|1|A|G|22
1XJR|1|A|A|23
1XJR|1|A|G|24
1XJR|1|A|U|25
1XJR|1|A|A|26
1XJR|1|A|C|27

Current chains

Chain A

s2m RNA

Nearby chains