HL_1XMO_005

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

1XMO|1|A|U|204

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XMO_005 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3455

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

1XMO|1|A|G|199
1XMO|1|A|G|200
1XMO|1|A|C|201
1XMO|1|A|U|202
1XMO|1|A|U|203
1XMO|1|A|U|204
1XMO|1|A|G|216
1XMO|1|A|C|217
1XMO|1|A|C|218

Current chains

Chain A

16S ribosomal RNA

Nearby chains