HL_1XMO_008

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XMO_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0506

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1XMO|1|A|C|320
1XMO|1|A|A|321
1XMO|1|A|C|322
1XMO|1|A|U|323
1XMO|1|A|G|324
1XMO|1|A|A|325
1XMO|1|A|G|326
1XMO|1|A|A|327
1XMO|1|A|C|328
1XMO|1|A|A|329
1XMO|1|A|C|330
1XMO|1|A|G|331
1XMO|1|A|G|332
1XMO|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20