HL_1XMQ_013

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XMQ_013 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1382

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

1XMQ|1|A|C|522
1XMQ|1|A|A|523
1XMQ|1|A|G|524
1XMQ|1|A|C|525
1XMQ|1|A|C|526
1XMQ|1|A|G|527

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain L

30S Ribosomal Protein S12

Chain W

A-Site Messenger RNA