HL_1XMQ_025

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

1XMQ|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XMQ_025 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.1872

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

1XMQ|1|A|G|1134
1XMQ|1|A|U|1135
1XMQ|1|A|U|1136
1XMQ|1|A|C|1137
1XMQ|1|A|G|1138
1XMQ|1|A|G|1139
1XMQ|1|A|C|1140

Current chains

Chain A

16s ribosomal RNA

Nearby chains