HL_1XNQ_003

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XNQ_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1021

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1XNQ|1|A|G|158
1XNQ|1|A|G|159
1XNQ|1|A|A|160
1XNQ|1|A|A|161
1XNQ|1|A|A|162
1XNQ|1|A|C|163

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Ribosomal protein S20