HL_1XNQ_008

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XNQ_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0545

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1XNQ|1|A|C|320
1XNQ|1|A|A|321
1XNQ|1|A|C|322
1XNQ|1|A|U|323
1XNQ|1|A|G|324
1XNQ|1|A|A|325
1XNQ|1|A|G|326
1XNQ|1|A|A|327
1XNQ|1|A|C|328
1XNQ|1|A|A|329
1XNQ|1|A|C|330
1XNQ|1|A|G|331
1XNQ|1|A|G|332
1XNQ|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein S16

Chain T

Ribosomal protein S20