HL_1XNQ_034

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCUICGAAC

Length

9 nucleotides

Bulged bases

1XNQ|1|X|I|34

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

1XNQ|1|X|G|31
1XNQ|1|X|C|32
1XNQ|1|X|U|33
1XNQ|1|X|I|34
1XNQ|1|X|C|35
1XNQ|1|X|G|36
1XNQ|1|X|A|37
1XNQ|1|X|A|38
1XNQ|1|X|C|39

Current chains

Chain X

Anticodon tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L

Ribosomal protein S12

Chain M

Ribosomal protein S13

Chain W

mRNA