HL_1XNR_008

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XNR_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0602

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1XNR|1|A|C|320
1XNR|1|A|A|321
1XNR|1|A|C|322
1XNR|1|A|U|323
1XNR|1|A|G|324
1XNR|1|A|A|325
1XNR|1|A|G|326
1XNR|1|A|A|327
1XNR|1|A|C|328
1XNR|1|A|A|329
1XNR|1|A|C|330
1XNR|1|A|G|331
1XNR|1|A|G|332
1XNR|1|A|G|333

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain P

16S Ribosomal protein S16

Chain T

16S Ribosomal protein S20