HL_1XNR_018

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

1XNR|1|A|U|839, 1XNR|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XNR_018 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.552

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

1XNR|1|A|G|837
1XNR|1|A|G|838
1XNR|1|A|U|839
1XNR|1|A|C|840
1XNR|1|A|U|841
1XNR|1|A|C|848
1XNR|1|A|C|849

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain B

16S Ribosomal protein S2

Chain R

16S Ribosomal protein S18