HL_1XWP_001

3D structure

PDB id

1XWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of AUCGCA loop

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAUCGCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1XWP_001 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.2263

The information below is about HL_3HHN_010

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1XWP|1|A|G|4
1XWP|1|A|A|5
1XWP|1|A|U|6
1XWP|1|A|C|7
1XWP|1|A|G|8
1XWP|1|A|C|9
1XWP|1|A|A|10
1XWP|1|A|C|11

Current chains

Chain A

5'-R(*GP*GP*AP*GP*AP*UP*CP*GP*CP*AP*CP*UP*CP*CP*A)-3'

Nearby chains