HL_1Y69_012

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

1Y69|1|0|G|399, 1Y69|1|0|U|400, 1Y69|1|0|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.376

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1Y69|1|0|G|395
1Y69|1|0|U|396
1Y69|1|0|U|397
1Y69|1|0|C|398
1Y69|1|0|G|399
1Y69|1|0|U|400
1Y69|1|0|G|401
1Y69|1|0|A|402
1Y69|1|0|A|403
1Y69|1|0|A|404
1Y69|1|0|C|405

Current chains

Chain 0

23S ribosomal RNA

Nearby chains