HL_1Y69_013

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

1Y69|1|0|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.2135

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1Y69|1|0|G|423
1Y69|1|0|G|424
1Y69|1|0|A|425
1Y69|1|0|C|426
1Y69|1|0|C|427
1Y69|1|0|A|428
1Y69|1|0|C|429
1Y69|1|0|C|430

Current chains

Chain 0

23S ribosomal RNA

Nearby chains