HL_1Y69_017

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1Y69|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.1388

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1Y69|1|0|U|575
1Y69|1|0|A|576
1Y69|1|0|U|577
1Y69|1|0|U|578
1Y69|1|0|G|579
1Y69|1|0|A|580
1Y69|1|0|A|581
1Y69|1|0|G|582
1Y69|1|0|C|583
1Y69|1|0|A|584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains