HL_1Y69_023

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

1Y69|1|0|A|794, 1Y69|1|0|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_023 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3243

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1Y69|1|0|U|792
1Y69|1|0|G|793
1Y69|1|0|A|794
1Y69|1|0|A|795
1Y69|1|0|A|796
1Y69|1|0|A|797
1Y69|1|0|G|798

Current chains

Chain 0

23S ribosomal RNA

Nearby chains