HL_1Y69_027

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_027 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.3414

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|G|989
1Y69|1|0|A|990
1Y69|1|0|A|991
1Y69|1|0|A|992
1Y69|1|0|C|993
1Y69|1|0|A|994
1Y69|1|0|A|995
1Y69|1|0|C|996

Current chains

Chain 0

23S ribosomal RNA

Nearby chains